Protein ZmCOL8 | |
---|---|
Information | |
TF Name: | ZmCOL8 |
Species: | Maize |
TF Family: | C2C2-CO-like |
Gene Name(Synonym): | COL8 |
Uniprot ID: | B6TFB2 |
Subgenome: | 2 |
ZmCOL8 is a protein in the C2C2-CO-like family.
Overview of domains present in v5 transcripts | ||
---|---|---|
PF00643 | PF06203 | |
Zm00001eb216410_T001 | ||
Zm00001eb216410_T002 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d013443 | DAPseq | sequence | fimo | position | |
Zm00001d013443 | DAPseq | sequence | fimo | position | |
Zm00001d013443 | ChIPseq | sequence | fimo | position | |
Zm00001d013443 | PChIPseq | sequence | fimo | position |
MTSAGAATGAALGARTARSCDGCMRRRARWHCPADDAFLCQTCDVSVHSANPLARRHHRVRLPSASCSSPPRDPDAPTWL
HGLKRRPRTPRSKPGGSKSNKHEATPSFIAAAASSAAVPDLEAEESGSGILGGNDDHHGFLQDDDEDLLYRVPVFDPMLA
EFYNPVADEGEQKPACSLLMPSLAETSPEFASGGSAEADGLSVSFHVPDMELASFAADMESLLMGVDDDGFDCLGFLDEE
KPQVNADLDAIVAPAPEPEDKKRKRPEMILKLNYEGVIASWVRDGGSPWFHGERPHLDCHELWSDDFTTGSRELLGGAVT
PVTGGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRATLPPLPRPPPPQQQQQQKQLPRAPPHVGMV
LPPPPVSNGRLWF
MTSAGAATGAALGARTARSCDGCMRRRARWHCPADDAFLCQTCDVSVHSANPLARRHHRVRLPSASCSSPPRDPDAPTWL
HGLKRRPRTPRSKPGGSKSNKHEATPSFIAAAASSAAVPDLEAEESGSGILGGNDDHHGFLQDDDEDLLYRVPVFDPMLA
EFYNPVADEGEQKPACSLLMPSLAETSPEFASGGSAEADGLSVSFHVPDMELASFAADMESLLMGVDDDGFDCLGFLDEE
KPQVNADLDAIVAPAPEPEDKKRKRPEMILKLNYEGVIASWVRDGGSPWFHGERPHLDCHELWSDDFTTGSRELLGGAVT
PVTGGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRATLPPLPRPPPPQQQQQQKQLPRAPPHVGMV
LPPPPVSNGRLWF
MTSAGAATGAALGARTARSCDGCMRRRARWHCPADDAFLCQTCDVSVHSANPLARRHHRVRLPSASCSSPPRDPDAPTWL
HGLKRRPRTPRSKPGGSKSNKHEATPSFIAAAASSAAVPDLEAEESGSGILGGNDDHHGFLQDDDEDLLYRVPVFDPMLA
EFYNPVADEGEQKPACSLLMPSLAETSPEFASGGSAEADGLSVSFHVPDMELASFAADMESLLMGVDDDGFDCLGFLDEE
KPQVNADLDAIVAPAPEPEDKKRKRPEMILKLNYEGVIASWVRDGGSPWFHGERPHLDCHELWSDDFTTGSRELLGGAVT
PVTGGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRATLPPLPRPPPPQQQQQQKQLPRAPPHVGMV
LPPPPVSNGRLWF
MTSAGAATGAALGARTARSCDGCMRRRARWHCPADDAFLCQTCDVSVHSANPLARRHHRVRLPSASCSSPPRDPDAPTWL
HGLKRRPRTPRSKPGGSKSNKHEATPSFIAAAASSAAVPDLEAEESGSGILGGNDDHHGFLQDDDEDLLYRVPVFDPMLA
EFYNPVADEGEQKPACSLLMPSLAETSPEFASGGSAEADGLSVSFHVPDMELASFAADMESLLMGVDDDGFDCLGFLDEE
KPQVNADLDAIVAPAPEPEDKKRKRPEMILKLNYEGVIASWVRDGGSPWFHGERPHLDCHELWSDDFTTGSRELLGGAVT
PVTGGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRATLPPLPRPPPPQQQQQQKQLPRAPPHVGMV
LPPPPVSNGRLWF
MTSAGAATGAALGARTARSCDGCMRRRARWHCPADDAFLCQTCDVSVHSANPLARRHHRVRLPSASCSSPPRDPDAPTWL
HGLKRRPRTPRSKPGGSKSNKHEATPSFIAAAASSAAVPDLEAEESGSGILGGNDDHHGFLQDDDEDLLYRVPVFDPMLA
EFYNPVADEGEQKPACSLLMPSLAETSPEFASGGSAEADGLSVSFHVPDMELASFAADMESLLMGVDDDGFDCLGFLDEE
KPQVNADLDAIVAPAPEPEDKKRKRPEMILKLNYEGVIASWVRDGGSPWFHGERPHLDCHELWSDDFTTGSRELLGGAVT
PVTGGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRATLPPLPRPPPPQQQQQQKQLPRAPPHVGMV
LPPPPVSNGRLWF
MTSAGAATGAALGARTARSCDGCMRRRARWHCPADDAFLCQTCDVSVHSANPLARRHHRVRLPSASCSSPPRDPDAPTWL
HGLKRRPRTPRSKPGGSKSNKHEATPSFIAAAASSAAVPDLEAEESGSGILGGNDDHHGFLQDDDEDLLYRVPVFDPMLA
EFYNPVADEGEQKPACSLLMPSLAETSPEFASGGSAEADGLSVSFHVPDMELASFAADMESLLMGVDDDGFDCLGFLDEE
KPQVNADLDAIVAPAPEPEDKKRKRPEMILKLNYEGVIASWVRDGGSPWFHGERPHLDCHELWSDDFTTGSRELLGGAVT
PVTGGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRATLPPLPRPPPPQQQQQQKQLPRAPPHVGMV
LPPPPVSNGRLWF
Secondary Structure Color Code | |
---|---|
BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
---|---|
PF00643 |
|
PF06203 |
|
Hover here to show all domains |
GCCACACTGTTCCCGTTTTTTTTGT...
GCCACACTGTTCCCGTTTTTTTTGTTAAGCTCTCGCTTAACCTAAACGCCGGGAGCACAAGTGCTCGGCGAAATGACGAGCGCCGGAGCGGCGACAGGCGCCGCGCTAGGCGCGCGGACGGCGCGGTCCTGCGACGGCTGCATGAGGCGGCGGGCGCGGTGGCACTGCCCCGCCGACGACGCCTTCTTGTGCCAGACCTGCGACGTCTCCGTGCACTCGGCGAACCCGCTCGCGCGCCGCCACCACCGCGTCCGCCTCCCCTCTGCGTCCTGCTCCTCCCCACCGCGCGACCCGGACGCGCCAACGTGGCTCCACGGCCTCAAGCGACGGCCACGCACGCCGCGGTCCAAGCCAGGGGGGAGCAAGAGCAACAAGCATGAGGCGACTCCCAGCTTTATCGCCGCGGCTGCGTCGTCGGCAGCGGTCCCCGACCTCGAGGCGGAGGAGTCCGGCTCCGGTATCCTGGGCGGTAACGACGACCACCACGGGTTCCTGCAGGATGACGACGAAGACCTTCTGTACCGCGTGCCGGTGTTCGACCCTATGCTCGCCGAGTTCTACAACCCCGTGGCCGACGAGGGGGAGCAGAAGCCGGCCTGCAGCCTGCTGATGCCGTCTCTCGCGGAAACATCGCCGGAGTTCGCCTCCGGCGGCTCGGCGGAGGCGGACGGGCTCTCCGTGTCGTTCCACGTCCCGGACATGGAGCTCGCTAGCTTCGCCGCGGACATGGAGAGCCTCCTCATGGGAGTCGACGACGACGGGTTTGACTGTTTGGGTTTCTTGGACGAAGAGAAACCTCAGGTGAACGCGGACTTGGACGCCATAGTAGCGCCGGCGCCTGAACCAGAGGACAAGAAACGGAAGCGGCCGGAGATGATACTCAAGCTCAACTACGAAGGCGTCATCGCCTCATGGGTCCGTGACGGCGGCTCGCCGTGGTTCCACGGCGAGCGTCCTCACCTCGACTGTCACGAGCTATGGTCGGACGACTTCACGACGGGTAGCCGGGAACTCCTCGGCGGAGCCGTGACACCGGTGACCGGTGGCGAGCGTGAGGCGCGGGTGTCGCGATACAGGGAGAAGCGGCGGACGCGACTGTTCGCCAAGAAGATCCGGTACGAGGTGCGCAAGCTCAACGCCGAGAAGCGGCCGCGGATGAAGGGTCGGTTCGTGAAGCGCGCCACGCTTCCGCCGCTGCCAAGGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGAAGCAGCTGCCACGCGCACCGCCACACGTGGGCATGGTGCTCCCACCACCTCCGGTATCGAACGGGCGCTTGTGGTTTTGAGACCATATGCATGCATGGAAGCATGCATGAAGCAACGTATGTGCGTGATGCATCGATGCATCTATCTCGCTCGTAGCATGCGCATGTTCTTTCTACTCTACTTTTAATTCGTGCGTGCGAATTAGGGCACCCCACAAGATAATGCTCCCTGCTTACGACTGAAATATATTTGTTTGTACATGTGCAGAATAGTTAAGAAAGTATATTTATAGCCTAGGTTTGTTGTTTATCTTTTCTAGTTGTTGTAAAGAAGGATGCACTAAATACAAGGGAAGGGTGTAGATTTTGATAGATGCAGAGCCATGCGTGCTACACTATAGCGTCCTTTGATTCACATATTTGTAACGTAATAGTTAAATAATAACGTTAAATTATGTTTGTTTTAGTC
MTSAGAATGAALGARTARSCDGCMRRRARWHCPADDAFLCQTCDVSVHSANPLARRHHRVRLPSASCSSPPRDPDAPTWL
HGLKRRPRTPRSKPGGSKSNKHEATPSFIAAAASSAAVPDLEAEESGSGILGGNDDHHGFLQDDDEDLLYRVPVFDPMLA
EFYNPVADEGEQKPACSLLMPSLAETSPEFASGGSAEADGLSVSFHVPDMELASFAADMESLLMGVDDDGFDCLGFLDEE
KPQVNADLDAIVAPAPEPEDKKRKRPEMILKLNYEGVIASWVRDGGSPWFHGERPHLDCHELWSDDFTTGSRELLGGAVT
PVTGGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRATLPPLPRPPPPQQQQQQKQLPRAPPHVGMV
LPPPPVSNGRLWF
GCCACACTGTTCCCGTTTTTTTTGT...
GCCACACTGTTCCCGTTTTTTTTGTTAAGCTCTCGCTTAACCTAAACGCCGGGAGCACAAGTGCTCGGCGAAATGACGAGCGCCGGAGCGGCGACAGGCGCCGCGCTAGGCGCGCGGACGGCGCGGTCCTGCGACGGCTGCATGAGGCGGCGGGCGCGGTGGCACTGCCCCGCCGACGACGCCTTCTTGTGCCAGACCTGCGACGTCTCCGTGCACTCGGCGAACCCGCTCGCGCGCCGCCACCACCGCGTCCGCCTCCCCTCTGCGTCCTGCTCCTCCCCACCGCGCGACCCGGACGCGCCAACGTGGCTCCACGGCCTCAAGCGACGGCCACGCACGCCGCGGTCCAAGCCAGGGGGGAGCAAGAGCAACAAGCATGAGGCGACTCCCAGCTTTATCGCCGCGGCTGCGTCGTCGGCAGCGGTCCCCGACCTCGAGGCGGAGGAGTCCGGCTCCGGTATCCTGGGCGGTAACGACGACCACCACGGGTTCCTGCAGGATGACGACGAAGACCTTCTGTACCGCGTGCCGGTGTTCGACCCTATGCTCGCCGAGTTCTACAACCCCGTGGCCGACGAGGGGGAGCAGAAGCCGGCCTGCAGCCTGCTGATGCCGTCTCTCGCGGAAACATCGCCGGAGTTCGCCTCCGGCGGCTCGGCGGAGGCGGACGGGCTCTCCGTGTCGTTCCACGTCCCGGACATGGAGCTCGCTAGCTTCGCCGCGGACATGGAGAGCCTCCTCATGGGAGTCGACGACGACGGGTTTGACTGTTTGGGTTTCTTGGACGAAGAGAAACCTCAGGTGAACGCGGACTTGGACGCCATAGTAGCGCCGGCGCCTGAACCAGAGGACAAGAAACGGAAGCGGCCGGAGATGATACTCAAGCTCAACTACGAAGGCGTCATCGCCTCATGGGTCCGTGACGGCGGCTCGCCGTGGTTCCACGGCGAGCGTCCTCACCTCGACTGTCACGAGCTATGGTCGGACGACTTCACGACGGGTAGCCGGGAACTCCTCGGCGGAGCCGTGACACCGGTGACCGGTGGCGAGCGTGAGGCGCGGGTGTCGCGATACAGGGAGAAGCGGCGGACGCGACTGTTCGCCAAGAAGATCCGGTACGAGGTGCGCAAGCTCAACGCCGAGAAGCGGCCGCGGATGAAGGGTCGGTTCGTGAAGCGCGCCACGCTTCCGCCGCTGCCAAGGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGAAGCAGCTGCCACGCGCACCGCCACACGTGGGCATGGTGCTCCCACCACCTCCGGTATCGAACGGGCGCTTGTGGTTTTGAGACCATATGCATGCATGGAAGCATGCATGAAGCAACGTATGTGCGTGATGCATCGATGCATCTATCTCGCTCGTAGCATGCGCATGTTCTTTCTACTCTACTTTTAATTCGTGCGTGCGAATTAGGGCACCCCACAAGATAATGCTCCCTGCTTACGACTGAAATATATTTGTTTGTACATGTGCAGAATAGTTAAGAAAGTATATTTATAGCCTAGGTTTGTTGTTTATCTTTTCTAGTTGTTGTAAAGAAGGATGCACTAAATACAAGGGAAGGGTGTAGATTTTGATAGATGCAGAGCCATGCGTGCTACACTATAGCGTCCTTTGATTCACATATTTGTAACGTAATAGTTAAATAATAACGTTAAATTATGTTTGTTTTAGTCCAGCCGTACTAAAAATTGATACTGACCAATTCAAACTTGTTAACGGCGATAATCGAATGTAAATTATTAACATTACCATTACCATTTATATTATATTTTATGAACAAACAACAACTATGCAACTCTGAGCTTAGACTTTGTAAGATTGAAGTGATGATATACTGTAGTGTT
MTSAGAATGAALGARTARSCDGCMRRRARWHCPADDAFLCQTCDVSVHSANPLARRHHRVRLPSASCSSPPRDPDAPTWL
HGLKRRPRTPRSKPGGSKSNKHEATPSFIAAAASSAAVPDLEAEESGSGILGGNDDHHGFLQDDDEDLLYRVPVFDPMLA
EFYNPVADEGEQKPACSLLMPSLAETSPEFASGGSAEADGLSVSFHVPDMELASFAADMESLLMGVDDDGFDCLGFLDEE
KPQVNADLDAIVAPAPEPEDKKRKRPEMILKLNYEGVIASWVRDGGSPWFHGERPHLDCHELWSDDFTTGSRELLGGAVT
PVTGGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRATLPPLPRPPPPQQQQQQKQLPRAPPHVGMV
LPPPPVSNGRLWF
GCCACACTGTTCCCGTTTTTTTTGT...
GCCACACTGTTCCCGTTTTTTTTGTTAAGCTCTCGCTTAACCTAAACGCCGGGAGCACAAGTGCTCGGCGAAATGACGAGCGCCGGAGCGGCGACAGGCGCCGCGCTAGGCGCGCGGACGGCGCGGTCCTGCGACGGCTGCATGAGGCGGCGGGCGCGGTGGCACTGCCCCGCCGACGACGCCTTCTTGTGCCAGACCTGCGACGTCTCCGTGCACTCGGCGAACCCGCTCGCGCGCCGCCACCACCGCGTCCGCCTCCCCTCTGCGTCCTGCTCCTCCCCACCGCGCGACCCGGACGCGCCAACGTGGCTCCACGGCCTCAAGCGACGGCCACGCACGCCGCGGTCCAAGCCAGGGGGGAGCAAGAGCAACAAGCATGAGGCGACTCCCAGCTTTATCGCCGCGGCTGCGTCGTCGGCAGCGGTCCCCGACCTCGAGGCGGAGGAGTCCGGCTCCGGTATCCTGGGCGGTAACGACGACCACCACGGGTTCCTGCAGGATGACGACGAAGACCTTCTGTACCGCGTGCCGGTGTTCGACCCTATGCTCGCCGAGTTCTACAACCCCGTGGCCGACGAGGGGGAGCAGAAGCCGGCCTGCAGCCTGCTGATGCCGTCTCTCGCGGAAACATCGCCGGAGTTCGCCTCCGGCGGCTCGGCGGAGGCGGACGGGCTCTCCGTGTCGTTCCACGTCCCGGACATGGAGCTCGCTAGCTTCGCCGCGGACATGGAGAGCCTCCTCATGGGAGTCGACGACGACGGGTTTGACTGTTTGGGTTTCTTGGACGAAGAGAAACCTCAGGTGAACGCGGACTTGGACGCCATAGTAGCGCCGGCGCCTGAACCAGAGGACAAGAAACGGAAGCGGCCGGAGATGATACTCAAGCTCAACTACGAAGGCGTCATCGCCTCATGGGTCCGTGACGGCGGCTCGCCGTGGTTCCACGGCGAGCGTCCTCACCTCGACTGTCACGAGCTATGGTCGGACGACTTCACGACGGGTAGCCGGGAACTCCTCGGCGGAGCCGTGACACCGGTGACCGGTGGCGAGCGTGAGGCGCGGGTGTCGCGATACAGGGAGAAGCGGCGGACGCGACTGTTCGCCAAGAAGATCCGGTACGAGGTGCGCAAGCTCAACGCCGAGAAGCGGCCGCGGATGAAGGGTCGGTTCGTGAAGCGCGCCACGCTTCCGCCGCTGCCAAGGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGAAGCAGCTGCCACGCGCACCGCCACACGTGGGCATGGTGCTCCCACCACCTCCGGTATCGAACGGGCGCTTGTGGTTTTGAGACCATATGCATGCATGGAAGCATGCATGAAGCAACGTATGTGCGTGATGCATCGATGCATCTATCTCGCTCGTAGCATGCGCATGTTCTTTCTACTCTACTTTTAATTCGTGCGTGCGAATTAGGGCACCCCACAAGATAATGCTCCCTGCTTACGACTGAAATATATTTGTTTGTACATGTGCAGAATAGTTAAGAAAGTATATTTATAGCCTAGGTTTGTTGTTTATCTTTTCTAGTTGTTGTAAAGAAGGATGCACTAAATACAAGGGAAGGGTGTAGATTTTGATAGA
MLAEFYNPVADEGEQKPACSLLMPSLAETSPEFASGGSAEADGLSVSFHVPDMELASFAADMESLLMGVDDDGFDCLGFL
DEEKPQVNADLDAIVAPAPEPEDKKRKRPEMILKLNYEGVIASWVRDGGSPWFHGERPHLDCHELWSDDFTTGSRELLGG
AVTPVTGGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRATLPPLPRPPPPQQQQQQKQLPRAPPHV
GMVLPPPPVSNGRLWF
GTTCCCGTTTTTTTTGTTAAGCTCT...
GTTCCCGTTTTTTTTGTTAAGCTCTCGCTTAACCTAAACGCCGGGAGCACAAGTGCTCGGCGAAATGACGAGCGCCGGAGCGGCGACAGGCGCCGCGCTAGGCGCGCGGACGGCGCGGTCCTGCGACGGCTGCGTCCTGCTCCTCCCCACCGCGCGACCCGGACGCGCCAACGTGGCTCCACGGCCTCAAGCGACGGCCACGCACGCCGCGGTCCAAGCCAGGGGGGAGCAAGAGCAACAAGCATGAGGCGACTCCCAGCTTTATCGCCGCGGCTGCGTCGTCGGCAGCGGTCCCCGACCTCGAGGCGGAGGAGTCCGGCTCCGGTATCCTGGGCGGTAACGACGACCACCACGGGTTCCTGCAGGATGACGACGAAGACCTTCTGTACCGCGTGCCGGTGTTCGACCCTATGCTCGCCGAGTTCTACAACCCCGTGGCCGACGAGGGGGAGCAGAAGCCGGCCTGCAGCCTGCTGATGCCGTCTCTCGCGGAAACATCGCCGGAGTTCGCCTCCGGCGGCTCGGCGGAGGCGGACGGGCTCTCCGTGTCGTTCCACGTCCCGGACATGGAGCTCGCTAGCTTCGCCGCGGACATGGAGAGCCTCCTCATGGGAGTCGACGACGACGGGTTTGACTGTTTGGGTTTCTTGGACGAAGAGAAACCTCAGGTGAACGCGGACTTGGACGCCATAGTAGCGCCGGCGCCTGAACCAGAGGACAAGAAACGGAAGCGGCCGGAGATGATACTCAAGCTCAACTACGAAGGCGTCATCGCCTCATGGGTCCGTGACGGCGGCTCGCCGTGGTTCCACGGCGAGCGTCCTCACCTCGACTGTCACGAGCTATGGTCGGACGACTTCACGACGGGTAGCCGGGAACTCCTCGGCGGAGCCGTGACACCGGTGACCGGTGGCGAGCGTGAGGCGCGGGTGTCGCGATACAGGGAGAAGCGGCGGACGCGACTGTTCGCCAAGAAGATCCGGTACGAGGTGCGCAAGCTCAACGCCGAGAAGCGGCCGCGGATGAAGGGTCGGTTCGTGAAGCGCGCCACGCTTCCGCCGCTGCCAAGGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGAAGCAGCTGCCACGCGCACCGCCACACGTGGGCATGGTGCTCCCACCACCTCCGGTATCGAACGGGCGCTTGTGGTTTTGAGACCATATGCATGCATGGAAGCATGCATGAAGCAACGTATGTGCGTGATGCATCGATGCATCTATCTCGCTCGTAGCATGCGCATGTTCTTTCTACTCTACTTTTAATTCGTGCGTGCGAATTAGGGCACCCCACAAGATAATGCTCCCTGCTTACGACTGAAATATATTTGTTTGTACATGTGCAGAATAGTTAAGAAAGTATATTTATAGCCTAGGTTTGTTGTTTATCTTTTCTAGTTGTTGTAAAGAAGGATGCACTAAATACAAGGGAAGGGTGTAGATTTTGATAGATGCAGAGCCATGCGTGCTACACTATAGCGTCC
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